Rühr, P.T., van de Kamp, T., Faragó, T., Hammel, J., Wilde, F., Edel, C., Frenzel, M., Borisova, E., Baumbach, T., Blanke, A. (2021): Juvenile ecology drives adult morphology in two insect orders. Proceedings of the Royal Society B 288: 20210616. https://doi.org/10.1098/rspb.2021.0616
Related repositories are here:
https://github.com/Peter-T-Ruehr/checkpoint_converter
This ImageJ/Fiji macro converts an image stack directly into the *.ckpt and *.tif files needed by Checkpoint. The downscaling is now in its own script where other non-Checkpoint-specific tasks like rotation and cropping are done as well (https://github.com/Peter-T-Ruehr/stack_cropping).
https://github.com/Peter-T-Ruehr/checkpoint_importer_for_R
This reads in the landmarks from a *.ckpt file to skip the export function within Checkpoint which sometimes takes a bit to load with hundreds or thousands of large scans. Single Points and Curves are dealt with correctly, however Patches, Joints, and other primitives have not been tested.
Kraatz B, Sherratt E. (2016) Evolutionary morphology of the rabbit skull. PeerJ 4:e2453
https://doi.org/10.7717/peerj.2453
Pearson, Alannah, Groves, Colin, Cardini, Andrea, (2015). The ‘temporal effect’ in hominids: Reinvestigating the nature of support for a chimp-human clade in bone morphology, Journal of Human Evolution
http://www.sciencedirect.com/science/article/pii/S0047248415001645
Ikeda, Renie, (2014). Clinical Application of a Novel Three-Dimensional Analysis to Evaluate Temporomandibular Joint Space Changes After Orthognathic Surgery, University of California, San Francisco.
http://gradworks.umi.com/15/61/1561909.html
Kuzminsky, Susan, Gardiner, Megan, (2012). Three-dimensional laser scanning: potential uses for museum conservation and scientific research, Journal of Archeological Science, 39, 2744-2751.
http://www.sciencedirect.com/science/article/pii/S0305440312001409
Supporting:
Bastir, Markus, Rosas, Antonio, Gunz, Philipp, Peña-Melian, Angel, Manzi, Giorgio, Harvati, Katerina, Kruszynski, Robert, Stringer, Chris, Hublin, Jean-Jacques, (2001). Evolution of the base of the brain in highly encephalized human species, Nature Communications, doi:10.1038/ncomms1593.
http://pubman.mpdl.mpg.de/pubman/faces/viewItemOverviewPage.jsp?itemId=e...
Lysianna Ledoux, Myrium Boudadi-Maligne, (2015). The contribution of geometric morphometric analysis to prehistoric ichnology: the example of large canid tracks and their implication for the debate concerning wolf domestication, Journal of Archaeological Science, 61, 25-35.
http://www.sciencedirect.com/science/article/pii/S0305440315001600
Aida Gómez-Robles, José María Bermúdez de Castro, María Martinón-Torres, Leyre Prado- Simón, Juan Luis Arsuaga, (2015). A geometric morphometric analysis of hominin lower molars: Evolutionary implications and overview of postcanine dental variation, Journal of Human Evolution, 82, 34-50.
http://www.sciencedirect.com/science/article/pii/S0047248415000469
Marta San Millán, Antigoni Kaliontzopoulou, Carme Rissech, Daniel Turbón, (2015). A geometric morphometric analysis of acetabular shape of the primate hip joint in relation to locomotor behavior, Journal of Human Evolution, 83, 15-27.
http://www.sciencedirect.com/science/article/pii/S0047248415000743
Ahmet Uzun, Fikri Ozdemir, (2014). Morphometric analysis of nasal shapes and angles in young adults, Brazilian Journal of Otorhinolaryngology, 80, 397-402.
http://www.sciencedirect.com/science/article/pii/S1808869414000809
Makedonska, Jana, Wright, Barth W., Strait, David S., (2012). The Effect of Dietary Adaption on Cranial Morphological Integration in Capuchins (Order Primates, Genus Cebus), PLoS One, doi” 10.1371/journal.pone.0101378.
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0040398
Tschopp, Emanuel, Russo, João, Dzemski, Gordon, (2014). Retrodeformation as a test for the validity of phylogenetic characters: an example from diplodocid sauropod vertebrae, Palaeontologia Electronica, 16, 1-23.
http://palaeo-electronica.org/content/pdfs/312.pdf
Antonio Rosas, Laura Pérez-Criado, Markus Bastir, Almudena Estalrrich, Rosa Huguet, Antonio Garcia-Tabernero, Juan Francisco Pastor, Marco de la Rasilla, (2015). A geometric morphometrics comparative analysis of Neandertal humeri (epiphysis-fused) from the El Sidrón cave site (Asturias, Spain), Journal of Human Evolution, 82, 51-66.
http://www.sciencedirect.com/science/article/pii/S0047248415000512
A. Mitrovski-Bogdanović, Ž. Tomanović, M. Mitrović, A. Petrović, A. Ivanović, V. Žikić, P. Starý, C. Vorburger, (2014). The Praon dorsale-yomenae s. str. complex (Hymenoptera, Braconidae, Aphidiinae): Species discrimination using geometric morphometrics and molecular markers with description of a new species, Zoologischer Anzieger – A Journal of Comparative Zoology, 253, 270-282.
http://www.sciencedirect.com/science/article/pii/S0044523114000047
Joseph Owen, Keith Dobney, Allowen Evin, Thomas Cucchi, Greger Larson, Una Strand Vidarsdottir, (2014). The zooarchaeological application of quantifying cranial shape differences in wild boar and domestic pigs (Sus scrofa) using 3D geometric morphometrics, Journal of Archaeological Science, 43, 159-167.
http://www.sciencedirect.com/science/article/pii/S0305440313004408
Julia Arias-Martorell, David M. Alba, Josep M. Potau, Gaëlle Bello-Hellegouarch, Alejandro Pérez-Pérez, (2015). Morphological affinities of the proximal humerus ofEpipliopithecus vindobonensis and Pliopithecus antiquus: Suspensory inferences based on a 3D geometric morphometrics approach, Journal of Human Evolution, 80, 83-95.
http://www.sciencedirect.com/science/article/pii/S0047248414002048
Kyra E. Stull, Michael W. Kenyhercz, Ericka N. L’Abbé ,(2014). Ancestry estimation in South Africa using craniometrics and geometric morphometrics, Forensic Science International, 245, 206.e1-206.e7.
http://www.sciencedirect.com/science/article/pii/S0379073814004277
Stephen J. Lycett, Noreen von Cramon-Taubadel, (2013). Understanding the comparative catarrhine context of human pelvic form: A 3D geometric morphometric analysis, Journal of Human Evolution, 64, 300-310.
http://www.sciencedirect.com/science/article/pii/S0047248413000298
W.C.H. Parr, S. Wroe, U. Chamoli, H.S. Richards, M.R. McCurry, P.D. Clausen, C. McHenry, (2012). Toward integration of geometric morphometrics and computational biomechanics: New methods for 3D virtual reconstruction and quantitative analysis of Finite Element Models, Journal of Theoretical Biology, 21, 1-14.
http://www.sciencedirect.com/science/article/pii/S0022519312000409
David K. Thulman, (2012). Discriminating Paleoindian point types from Florida using landmark geometric morphometrics, Journal of Archeological Science, 39, 1599-1607.
http://www.sciencedirect.com/science/article/pii/S0305440312000167
Šárka Bejdová, Václav, Krajíček, Miroslav Peterka, Pavel Trefný, Jana Velemínská, (2012). Variability in palatal shape and size in patients with bilateral complete cleft lip and palate assessed using dense surface model construction and 3D geometric morphometrics, Journal of Cranio-Maxillofacial Surgery, 40, 201-208.
http://www.sciencedirect.com/science/article/pii/S1010518211001041
Isabelle De Groote, (2001). Femoral curvature in Neanderthals and modern humans: A 3D geometric morphometric analysis, Journal of Human Evolution, 60, 540-548.
http://www.sciencedirect.com/science/article/pii/S0047248410002186
Claire E. Terhune, William H. Kimbel, Charles A. Lockwood, (2007). Variation and diversity in Homo erectus: a 3D geometric morphometric analysis of the temporal bone, Journal of Human Evolution, 53, 41-60.
http://www.sciencedirect.com/science/article/pii/S0047248407000449